Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 3
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 1]
    53592803 G>A  Pum=  Qui=0.333  Rio=1.0

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.0      3        0    8.0
Qui1     Qui    60.0      5        0   10.0
Qui2     Qui     0.0      4        0    7.0
Qui3     Qui    33.3      3        0   10.0
Qui4     Qui     0.0      3        0   17.0
Rio1     Rio     0.0      3        0   12.5
Rio2     Rio     0.0      3        0    8.0
Rio3     Rio     0.0      3        0   13.0
Rio4     Rio     0.0      2        0   15.0