Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 5
  seen in >= 2 oysters: 2
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 0]
    53527617 A>C  Pum=0.056  Qui=0.19  Rio=0.787

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     7.7     13        0   18.0
Qui1     Qui    50.0      4        0    8.5
Qui2     Qui    22.2      9        0   20.0
Qui3     Qui     7.1     14        0   23.0
Qui4     Qui     0.0      1        0    7.0
Rio1     Rio   100.0      4        0   16.0
Rio2     Rio    33.3      3        0    7.0
Rio3     Rio   100.0      1        0    8.0
Rio4     Rio    75.0      4        0   13.5