Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 47
  seen in >= 2 oysters: 11
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 5  [CpG-destroying: 1]
    53527617 A>C  Pum=0.056  Qui=0.19  Rio=0.787
    53527750 A>T  Pum=0.0  Qui=0.474  Rio=0.982
    53527818 T>A  Pum=0.0  Qui=0.373  Rio=1.0
    53527914 C>A  Pum=0.0  Qui=0.318  Rio=1.0
    53527987 G>A  Pum=  Qui=0.304  Rio=0.966

7 CpGs in target; 7 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    17.9     67        0   12.2
Qui1     Qui    42.3     26        0    7.8
Qui2     Qui    39.1     46        0   11.7
Qui3     Qui    27.5     69        0   11.8
Qui4     Qui    69.2     13        0    7.2
Rio1     Rio    69.6     23        0    9.6
Rio2     Rio    42.9     21        0    7.3
Rio3     Rio    85.7     14        0    7.7
Rio4     Rio    55.6     27        0    9.3