Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 7
  seen in >= 2 oysters: 4
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 1]
    53497199 G>A  Pum=  Qui=0.222  Rio=0.765

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum   100.0      2        0   11.0
Qui1     Qui    40.0      5        0    9.0
Qui2     Qui              0        0    9.0
Qui3     Qui    50.0      2        1    5.0
Qui4     Qui   100.0      2        0    7.0
Rio1     Rio     0.0      6        0   14.0
Rio2     Rio     0.0      4        0   11.0
Rio3     Rio     0.0      1        0    6.0
Rio4     Rio     0.0      6        0   11.0