Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 8
  seen in >= 2 oysters: 5
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 3  [CpG-destroying: 1]
    53488115 T>C  Pum=0.143  Qui=0.188  Rio=0.692
    53488132 G>A  Pum=0.0  Qui=0.19  Rio=0.776
    53488157 T>A  Pum=0.0  Qui=0.333  Rio=0.978

1 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    75.0      4        0    7.0
Qui1     Qui    50.0      8        0   11.0
Qui2     Qui    63.6     11        0   12.0
Qui3     Qui    58.3     12        0   13.0
Qui4     Qui    76.9     13        0   13.0
Rio1     Rio     0.0     15        0   15.0
Rio2     Rio     0.0     12        0   12.0
Rio3     Rio     0.0     12        0   13.0
Rio4     Rio     0.0     10        0   11.0