Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 6
  seen in >= 2 oysters: 2
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 1]
    53485282 C>T  Pum=  Qui=0.235  Rio=0.909

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    28.6      7        0    9.0
Qui1     Qui    42.9      7        1   10.0
Qui2     Qui    63.6     11        1   14.5
Qui3     Qui    20.0      5        1    9.0
Qui4     Qui    75.0      8        0   14.0
Rio1     Rio     0.0      7        1   13.0
Rio2     Rio     0.0      9        0    9.0
Rio3     Rio     0.0     12        0   13.0
Rio4     Rio     0.0     11        1   15.0