Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 7
  seen in >= 2 oysters: 3
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 3  [CpG-destroying: 2]
    53482447 G>T  Pum=  Qui=0.357  Rio=0.929
    53482485 C>T  Pum=0.0  Qui=0.423  Rio=0.944
    53482519 G>A  Pum=0.0  Qui=0.312  Rio=0.941

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    75.0      4        0    9.5
Qui1     Qui    66.7      3        1   12.5
Qui2     Qui    57.1      7        1   16.0
Qui3     Qui    66.7      3        1    9.0
Qui4     Qui   100.0      2        0    3.0
Rio1     Rio     0.0      3        1    8.5
Rio2     Rio     0.0      3        1    8.0
Rio3     Rio     0.0      3        0    5.0
Rio4     Rio     0.0      5        1   10.0