Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 3
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    66.7      6        0    8.0
Qui1     Qui    33.3      6        0    7.0
Qui2     Qui    50.0      8        1   11.0
Qui3     Qui    40.0     10        0   12.0
Qui4     Qui    80.0      5        0    7.0
Rio1     Rio     0.0      4        0    4.5
Rio2     Rio     0.0      6        1    9.0
Rio3     Rio     0.0      9        0   11.0
Rio4     Rio     0.0      5        1   11.0