Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 34
  seen in >= 2 oysters: 5
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

17 CpGs in target; 4 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    64.9    191        0   14.8
Qui1     Qui    55.8     77        0    7.8
Qui2     Qui    46.0    189        0   16.4
Qui3     Qui    59.9    152        0   10.6
Qui4     Qui    50.0    138        0   10.5
Rio1     Rio    14.8    128        1   12.5
Rio2     Rio    48.6     74        0    6.8
Rio3     Rio    21.5     65        0    8.3
Rio4     Rio    24.4     90        0    7.6