Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 59
  seen in >= 2 oysters: 8
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

38 CpGs in target; 4 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    17.6     17        0    3.7
Qui1     Qui     0.0     79        0    8.2
Qui2     Qui    28.6     42        0    5.9
Qui3     Qui     9.4     32        0    8.0
Qui4     Qui     7.1     14        1    3.9
Rio1     Rio    37.8    127        0    9.5
Rio2     Rio    20.0     75        0    7.6
Rio3     Rio    50.0      6        0    4.3
Rio4     Rio    20.3     59        0    7.0