Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 22
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

33 CpGs in target; 31 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    77.6    143        0    8.1
Qui1     Qui    49.7    165        0    8.7
Qui2     Qui    81.4     97        0    9.3
Qui3     Qui    52.6    156        0   10.5
Qui4     Qui    27.1     96        0    7.3
Rio1     Rio    83.5    133        0   10.0
Rio2     Rio    78.4    116        0    8.5
Rio3     Rio    76.9     52        0    5.0
Rio4     Rio    90.1    151        1    9.1