Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 49
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

36 CpGs in target; 20 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    38.3    107        0    7.0
Qui1     Qui    44.7     94        0    5.7
Qui2     Qui    48.4    155        0    7.4
Qui3     Qui    26.2    122        0    7.0
Qui4     Qui    11.2    134        0    5.4
Rio1     Rio    79.3    193        1    8.2
Rio2     Rio    90.7    107        0    5.8
Rio3     Rio    84.0    150        0    7.3
Rio4     Rio    77.6    161        0    8.6