Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 8
  seen in >= 2 oysters: 4
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 2  [CpG-destroying: 1]
    45141968 A>G  Pum=0.5  Qui=0.211  Rio=0.889
    45141997 C>T  Pum=0.25  Qui=0.077  Rio=1.0

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    37.5      8        1   12.0
Qui1     Qui     0.0      2        0    4.0
Qui2     Qui    80.0      5        0   10.0
Qui3     Qui    80.0      5        0    9.0
Qui4     Qui    71.4      7        0    9.0
Rio1     Rio     0.0      3        1    7.0
Rio2     Rio    50.0      2        1    6.0
Rio3     Rio     0.0      7        0    8.0
Rio4     Rio     0.0      2        1    5.0