Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 21
  seen in >= 2 oysters: 2
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 2  [CpG-destroying: 2]
    44936682 C>T  Pum=0.5  Qui=0.25  Rio=1.0
    44936800 C>T  Pum=0.5  Qui=0.15  Rio=1.0

13 CpGs in target; 3 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    91.3     23        2    9.4
Qui1     Qui    75.0     12        1    4.8
Qui2     Qui    96.2     26        0    8.8
Qui3     Qui    95.2     21        0    7.3
Qui4     Qui    87.0     23        1    6.0
Rio1     Rio    76.7     30        2   11.1
Rio2     Rio    72.2     18        2    6.2
Rio3     Rio    81.2     16        2    5.3
Rio4     Rio    76.2     21        2    6.3