Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 5
  seen in >= 2 oysters: 1
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 1]
    44895302 G>A  Pum=  Qui=0.19  Rio=0.933

1 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    50.0      2        0    4.0
Qui1     Qui     0.0      3        0    3.5
Qui2     Qui    66.7      6        0    8.0
Qui3     Qui    71.4      7        0    8.5
Qui4     Qui    33.3      6        0    8.0
Rio1     Rio     0.0      7        0   10.5
Rio2     Rio     0.0      1        0    4.0
Rio3     Rio     0.0      3        0    5.0
Rio4     Rio     0.0      4        0    4.5