Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 22
  seen in >= 2 oysters: 7
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 2  [CpG-destroying: 2]
    44155623 G>A  Pum=  Qui=0.7  Rio=0.0
    44155853 C>T  Pum=0.0  Qui=0.525  Rio=0.0

18 CpGs in target; 17 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    88.5     78        0    9.3
Qui1     Qui    66.7     78        0    8.2
Qui2     Qui    81.4     86        1   11.7
Qui3     Qui    60.0    125        1   13.4
Qui4     Qui    67.4     95        1   11.2
Rio1     Rio    75.6     82        0   13.3
Rio2     Rio    83.5     85        0   12.8
Rio3     Rio    90.4     94        0   11.3
Rio4     Rio    81.2    144        0   13.3