Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 11
  seen in >= 2 oysters: 9
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 2  [CpG-destroying: 1]
    44141479 A>G  Pum=0.0  Qui=0.516  Rio=0.0
    44141521 G>A  Pum=0.0  Qui=0.608  Rio=0.0

1 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    80.0      5        0    5.0
Qui1     Qui    42.9     14        1   21.0
Qui2     Qui    28.0     25        1   33.0
Qui3     Qui    23.7     38        1   50.0
Qui4     Qui    28.6     21        1   26.0
Rio1     Rio    88.9      9        0   11.0
Rio2     Rio    83.3      6        0    7.0
Rio3     Rio    85.7      7        0    9.0
Rio4     Rio    90.9     11        0   11.5