Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 8
  seen in >= 2 oysters: 7
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 3  [CpG-destroying: 1]
    44141432 T>A  Pum=0.0  Qui=0.952  Rio=0.0
    44141479 A>G  Pum=0.0  Qui=0.516  Rio=0.0
    44141521 G>A  Pum=0.0  Qui=0.608  Rio=0.0

1 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum   100.0      4        0    4.0
Qui1     Qui    41.7     12        1   18.0
Qui2     Qui    50.0     18        1   24.0
Qui3     Qui    43.5     23        1   30.0
Qui4     Qui    55.6     18        1   22.0
Rio1     Rio    88.9      9        0   10.0
Rio2     Rio   100.0      6        0    7.0
Rio3     Rio   100.0      6        0    6.5
Rio4     Rio    84.6     13        0   15.0