Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 51
  seen in >= 2 oysters: 19
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 7  [CpG-destroying: 1]
    44141187 A>T  Pum=0.0  Qui=0.824  Rio=0.0
    44141232 A>T  Pum=0.0  Qui=0.733  Rio=0.0
    44141277 A>T  Pum=0.0  Qui=0.643  Rio=0.0
    44141432 T>A  Pum=0.0  Qui=0.952  Rio=0.0
    44141479 A>G  Pum=0.0  Qui=0.516  Rio=0.0
    44141521 G>A  Pum=0.0  Qui=0.608  Rio=0.0
    44141776 A>G  Pum=0.0  Qui=0.897  Rio=0.0

9 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    86.8     53        0    7.5
Qui1     Qui    58.6     58        2    8.7
Qui2     Qui    43.9     66        2   11.0
Qui3     Qui    55.4    121        3   17.8
Qui4     Qui    64.3     84        2   11.2
Rio1     Rio    83.8     68        0    8.6
Rio2     Rio    93.7     63        0    8.1
Rio3     Rio    95.6     45        0    6.2
Rio4     Rio    90.5     84        0    8.3