Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 52
  seen in >= 2 oysters: 4
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

30 CpGs in target; 11 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     1.2     82        0    4.6
Qui1     Qui    63.9     72        0    5.0
Qui2     Qui     0.0     50        1    3.6
Qui3     Qui     0.0     16        0    4.8
Qui4     Qui    43.6     55        0    4.8
Rio1     Rio     2.2     90        1    6.9
Rio2     Rio     1.5     65        0    6.2
Rio3     Rio     3.5     57        0    3.0
Rio4     Rio     0.0     42        0    6.0