Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 10
  seen in >= 2 oysters: 7
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 6  [CpG-destroying: 3]
    38377491 G>A  Pum=0.0  Qui=0.0  Rio=0.746
    38377503 A>T  Pum=0.0  Qui=0.0  Rio=0.77
    38377509 T>A  Pum=0.0  Qui=0.0  Rio=0.769
    38377512 A>G  Pum=0.0  Qui=0.0  Rio=0.667
    38377575 G>A  Pum=0.0  Qui=0.0  Rio=0.699
    38377587 G>A  Pum=0.0  Qui=0.0  Rio=0.699

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    94.7     19        0   21.0
Qui1     Qui   100.0      9        0   11.0
Qui2     Qui   100.0     27        0   29.5
Qui3     Qui   100.0      8        0   12.0
Qui4     Qui   100.0      4        0    6.0
Rio1     Rio    81.2     16        0   18.0
Rio2     Rio    80.0      5        0    9.0
Rio3     Rio    50.0     26        0   32.5
Rio4     Rio    56.5     23        0   24.5