Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 31
  seen in >= 2 oysters: 3
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

9 CpGs in target; 7 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    56.7     60        0    7.9
Qui1     Qui    56.6     53        0    7.9
Qui2     Qui    55.4     56        0    6.4
Qui3     Qui    52.2     69        0    8.6
Qui4     Qui    54.5     99        0    8.7
Rio1     Rio    18.9     53        0    4.2
Rio2     Rio    35.4     65        0    6.4
Rio3     Rio    29.8     47        0    5.8
Rio4     Rio    46.9     49        0    8.4