Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 9
  seen in >= 2 oysters: 3
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 0]
    33407290 G>T  Pum=0.4  Qui=1.0  Rio=0.467

1 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    60.0      5        0    7.0
Qui1     Qui     0.0      4        0    6.5
Qui2     Qui     0.0     11        0   12.0
Qui3     Qui     0.0      2        0    5.5
Qui4     Qui     0.0      5        0    6.0
Rio1     Rio    40.0     10        0   10.5
Rio2     Rio    62.5      8        0    7.5
Rio3     Rio    75.0      8        0   10.5
Rio4     Rio    42.9      7        0    7.0