Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 5
  seen in >= 2 oysters: 1
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 1]
    33380331 G>A  Pum=  Qui=0.938  Rio=0.438

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.0      3        0    5.0
Qui1     Qui     0.0      5        0    9.5
Qui2     Qui     0.0      6        0   10.0
Qui3     Qui     0.0      2        0    3.0
Qui4     Qui     0.0      3        0    6.0
Rio1     Rio    80.0      5        0    9.5
Rio2     Rio              0        0    5.0
Rio3     Rio    75.0      4        0    8.0
Rio4     Rio    28.6      7        0   10.0