Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 30
  seen in >= 2 oysters: 1
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

15 CpGs in target; 7 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    76.5     68        0    9.9
Qui1     Qui    60.0     50        0    8.4
Qui2     Qui    44.2    104        0   11.8
Qui3     Qui    51.3     78        2   10.6
Qui4     Qui    21.1     57        0    6.8
Rio1     Rio    77.0     74        0   10.8
Rio2     Rio    70.0     70        0   10.4
Rio3     Rio    71.2     59        0    8.6
Rio4     Rio    73.8     65        0   10.1