Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 6
  seen in >= 2 oysters: 2
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 0]
    2659979 G>T  Pum=1.0  Qui=0.167  Rio=0.917

1 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    16.7      6        0    6.5
Qui1     Qui     0.0      2        0    4.0
Qui2     Qui    50.0      4        0    5.0
Qui3     Qui   100.0      5        0    6.0
Qui4     Qui    75.0      4        0    6.0
Rio1     Rio     0.0      2        0    3.0
Rio2     Rio     0.0      4        0    5.0
Rio3     Rio     0.0      3        1    6.0
Rio4     Rio     0.0      5        0    5.0