Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 11
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

6 CpGs in target; 3 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    95.0     40        0    8.9
Qui1     Qui    28.6      7        0    8.1
Qui2     Qui    46.7     45        0    9.7
Qui3     Qui    61.9     21        0    6.3
Qui4     Qui    50.0     20        0    6.2
Rio1     Rio    75.8     33        0    8.5
Rio2     Rio    76.0     25        0    8.9
Rio3     Rio    78.1     32        0    7.2
Rio4     Rio    69.2     52        0   11.2