Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 9
  seen in >= 2 oysters: 7
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 2  [CpG-destroying: 1]
    2377543 T>A  Pum=0.0  Qui=0.25  Rio=0.77
    2377544 G>A  Pum=0.0  Qui=0.179  Rio=0.741

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    42.9      7        0   12.0
Qui1     Qui    40.0      5        0   13.0
Qui2     Qui    60.0     10        0   12.5
Qui3     Qui    75.0      8        0   12.0
Qui4     Qui    44.4      9        0   12.5
Rio1     Rio    12.5     16        0   29.0
Rio2     Rio    27.3     11        0   17.0
Rio3     Rio     0.0      2        0   11.0
Rio4     Rio     0.0     10        0   19.0