Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 48
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

25 CpGs in target; 3 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    63.8     47        0    5.5
Qui1     Qui    65.7     35        0    7.0
Qui2     Qui    57.1     35        0    3.4
Qui3     Qui    55.6     18        0    5.5
Qui4     Qui    76.0     50        0    5.4
Rio1     Rio    67.6     34        0    5.7
Rio2     Rio    75.8     33        0    5.9
Rio3     Rio    62.5     32        0    3.7
Rio4     Rio    85.0     20        0    5.4