Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 38
  seen in >= 2 oysters: 5
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

25 CpGs in target; 4 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     2.2     46        0    7.0
Qui1     Qui    15.7     83        0    7.7
Qui2     Qui    13.3     60        0    6.5
Qui3     Qui     0.0     28        0    7.6
Qui4     Qui    10.0     70        0    5.9
Rio1     Rio    40.3     62        0    8.3
Rio2     Rio    42.9     35        0    4.4
Rio3     Rio    55.3     38        0    4.6
Rio4     Rio    45.7     46        0    7.4