Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 51
  seen in >= 2 oysters: 7
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 3  [CpG-destroying: 3]
    2337505 C>T  Pum=1.0  Qui=0.154  Rio=1.0
    2337831 C>T  Pum=1.0  Qui=0.292  Rio=1.0
    2337858 C>T  Pum=1.0  Qui=0.231  Rio=1.0

11 CpGs in target; 3 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    54.5     22        2    6.6
Qui1     Qui    83.7     43        0    8.3
Qui2     Qui    92.0     25        0    6.3
Qui3     Qui   100.0     25        0    6.3
Qui4     Qui    69.0     29        0    5.8
Rio1     Rio    64.0     25        0    7.4
Rio2     Rio    38.5     26        1    5.1
Rio3     Rio    69.0     29        2    5.5
Rio4     Rio    60.0     30        2    7.3