Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 26
  seen in >= 2 oysters: 6
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 6  [CpG-destroying: 1]
    2109085 T>C  Pum=  Qui=0.037  Rio=0.84
    2109120 T>C  Pum=  Qui=0.0  Rio=0.955
    2109562 C>T  Pum=  Qui=0.0  Rio=1.0
    2109619 A>T  Pum=  Qui=0.0  Rio=1.0
    2109626 A>T  Pum=  Qui=0.0  Rio=1.0
    2109939 A>G  Pum=1.0  Qui=0.0  Rio=0.917

17 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    50.0     10        0    1.9
Qui1     Qui    19.4     31        0    6.3
Qui2     Qui    14.3     21        0    4.9
Qui3     Qui    10.7     28        0    7.4
Qui4     Qui    25.0     44        0    6.6
Rio1     Rio    65.6     32        0    6.0
Rio2     Rio    89.5     19        0    4.3
Rio3     Rio   100.0     10        0    2.0
Rio4     Rio    47.1     17        0    3.6