Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 3
  seen in >= 2 oysters: 2
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 2  [CpG-destroying: 2]
    2103987 G>A  Pum=  Qui=0.0  Rio=1.0
    2104026 C>T  Pum=1.0  Qui=0.0  Rio=0.9

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.0      4        1    9.5
Qui1     Qui   100.0      5        0    8.0
Qui2     Qui    80.0      5        0    9.0
Qui3     Qui   100.0      5        0    9.5
Qui4     Qui    85.7      7        0   10.5
Rio1     Rio     0.0      7        0    9.0
Rio2     Rio     0.0      4        0    6.0
Rio3     Rio     0.0      5        0    5.0
Rio4     Rio     0.0      8        1   14.0