Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 3
  seen in >= 2 oysters: 3
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 3  [CpG-destroying: 2]
    2090894 G>A  Pum=0.857  Qui=0.0  Rio=0.96
    2090915 A>T  Pum=0.7  Qui=0.0  Rio=0.674
    2090918 C>T  Pum=  Qui=0.0  Rio=0.933

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.0      7        1   10.0
Qui1     Qui    83.3      6        0    9.5
Qui2     Qui    81.8     11        0   18.0
Qui3     Qui   100.0      7        0    9.0
Qui4     Qui   100.0      8        0   16.0
Rio1     Rio     0.0      8        1   13.0
Rio2     Rio     0.0      5        1   10.0
Rio3     Rio     0.0      7        0    7.0
Rio4     Rio     0.0      9        1   14.0