Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 3
  seen in >= 2 oysters: 3
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 3  [CpG-destroying: 2]
    2090894 G>A  Pum=0.857  Qui=0.0  Rio=0.96
    2090915 A>T  Pum=0.7  Qui=0.0  Rio=0.674
    2090918 C>T  Pum=  Qui=0.0  Rio=0.933

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    14.3      7        0   10.0
Qui1     Qui   100.0      6        0    9.0
Qui2     Qui   100.0     11        0   15.0
Qui3     Qui    87.5      8        0   11.0
Qui4     Qui    90.0     10        0   18.0
Rio1     Rio     0.0      6        0   11.0
Rio2     Rio     0.0      6        0    9.0
Rio3     Rio     0.0      6        0    8.0
Rio4     Rio     0.0      7        0   12.0