Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 9
  seen in >= 2 oysters: 4
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 4  [CpG-destroying: 1]
    2086566 A>C  Pum=0.833  Qui=0.0  Rio=0.741
    2086587 A>C  Pum=0.857  Qui=0.0  Rio=0.8
    2086594 C>T  Pum=1.0  Qui=0.0  Rio=0.95
    2086612 C>A  Pum=0.857  Qui=0.0  Rio=1.0

1 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum   100.0      1        1    7.0
Qui1     Qui   100.0      1        0   12.5
Qui2     Qui   100.0      1        0   17.0
Qui3     Qui   100.0      4        0    9.0
Qui4     Qui    66.7      3        0    6.0
Rio1     Rio              0        1    8.0
Rio2     Rio     0.0      1        1    5.0
Rio3     Rio              0        1    3.5
Rio4     Rio     0.0      2        1    7.0