Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 51
  seen in >= 2 oysters: 6
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 8  [CpG-destroying: 3]
    2027242 G>T  Pum=1.0  Qui=0.0  Rio=1.0
    2027460 G>A  Pum=  Qui=0.048  Rio=1.0
    2027481 G>A  Pum=  Qui=0.0  Rio=1.0
    2027557 T>A  Pum=  Qui=0.0  Rio=0.867
    2027571 T>A  Pum=  Qui=0.0  Rio=0.5
    2027691 T>A  Pum=1.0  Qui=0.0  Rio=1.0
    2027914 A>T  Pum=1.0  Qui=0.0  Rio=0.833
    2027956 G>A  Pum=  Qui=0.0  Rio=0.5

11 CpGs in target; 6 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    73.8     42        0    6.5
Qui1     Qui    88.2     34        0    7.3
Qui2     Qui    95.8     48        0    7.9
Qui3     Qui    92.7     55        0    7.9
Qui4     Qui    91.1     45        0    7.6
Rio1     Rio    70.0     20        0    5.1
Rio2     Rio    75.0     20        0    4.9
Rio3     Rio    55.0     40        0    6.2
Rio4     Rio    68.2     44        0    8.4