Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 6
  seen in >= 2 oysters: 4
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 2  [CpG-destroying: 1]
    1954323 C>A  Pum=0.0  Qui=0.0  Rio=0.667
    1954370 G>A  Pum=0.462  Qui=0.0  Rio=0.576

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.0     13        1   17.0
Qui1     Qui    88.9      9        0   11.5
Qui2     Qui    59.1     22        0   25.0
Qui3     Qui    42.1     19        0   20.5
Qui4     Qui    53.8     26        0   29.0
Rio1     Rio     0.0     15        0   20.0
Rio2     Rio     0.0     13        0   16.0
Rio3     Rio     0.0     18        0   22.0
Rio4     Rio     0.0     13        0   17.0