Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 44
  seen in >= 2 oysters: 17
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 12  [CpG-destroying: 4]
    1920067 G>T  Pum=1.0  Qui=0.0  Rio=0.947
    1920075 G>T  Pum=1.0  Qui=0.0  Rio=1.0
    1920266 T>A  Pum=1.0  Qui=0.0  Rio=1.0
    1920324 A>G  Pum=0.429  Qui=0.0  Rio=0.667
    1920501 G>A  Pum=1.0  Qui=0.0  Rio=1.0
    1920502 G>T  Pum=1.0  Qui=0.0  Rio=1.0
    1920672 G>A  Pum=1.0  Qui=0.0  Rio=1.0
    1920690 C>T  Pum=0.857  Qui=0.0  Rio=1.0
    1920746 A>G  Pum=0.875  Qui=0.0  Rio=1.0
    1920769 C>A  Pum=0.75  Qui=0.0  Rio=1.0
    1920904 G>A  Pum=0.333  Qui=0.0  Rio=0.786
    1920948 T>G  Pum=0.846  Qui=0.0  Rio=0.815

12 CpGs in target; 3 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    56.4     55        0    8.3
Qui1     Qui    91.3     69        0    7.2
Qui2     Qui    88.2     51        0    6.4
Qui3     Qui    92.6     54        0    5.9
Qui4     Qui    91.7     24        0    4.4
Rio1     Rio    65.3     49        0    7.4
Rio2     Rio    66.7     48        0    6.7
Rio3     Rio    56.2     32        0    6.9
Rio4     Rio    56.5     46        0    7.9