Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 1
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.0      9        0   12.5
Qui1     Qui    43.8     16        0   28.5
Qui2     Qui    57.1     14        0   23.0
Qui3     Qui    23.1     13        0   25.5
Qui4     Qui    37.5      8        0   16.0
Rio1     Rio    11.1      9        0   13.5
Rio2     Rio     0.0      7        0   16.0
Rio3     Rio    14.3      7        0   16.0
Rio4     Rio     0.0      1        0    5.0