Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 4
  seen in >= 2 oysters: 3
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 3  [CpG-destroying: 3]
    1898089 G>A  Pum=  Qui=0.0  Rio=0.95
    1898104 G>A  Pum=  Qui=0.0  Rio=1.0
    1898115 C>T  Pum=1.0  Qui=0.0  Rio=1.0

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    33.3      3        1    7.0
Qui1     Qui    75.0      4        0    6.0
Qui2     Qui    75.0      4        0    9.0
Qui3     Qui   100.0      3        0    5.5
Qui4     Qui   100.0      1        0    5.5
Rio1     Rio     0.0      4        0    6.5
Rio2     Rio     0.0      5        0   10.5
Rio3     Rio     0.0      7        0    9.0
Rio4     Rio     0.0      4        0    5.5