Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 2
  seen in >= 2 oysters: 2
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 2  [CpG-destroying: 2]
    1895442 G>A  Pum=0.857  Qui=0.0  Rio=1.0
    1895454 G>A  Pum=0.857  Qui=0.0  Rio=1.0

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    14.3      7        0   10.0
Qui1     Qui   100.0      5        0    5.0
Qui2     Qui    75.0      4        0   10.0
Qui3     Qui    85.7      7        0   11.0
Qui4     Qui              0        0    4.0
Rio1     Rio     0.0      9        0   10.0
Rio2     Rio     0.0      6        0    9.0
Rio3     Rio     0.0      5        0   12.0
Rio4     Rio     0.0      6        0   14.5