Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 2
  seen in >= 2 oysters: 2
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 2  [CpG-destroying: 1]
    1886102 G>A  Pum=1.0  Qui=0.0  Rio=1.0
    1886125 A>G  Pum=1.0  Qui=0.0  Rio=1.0

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.0     14        0   14.0
Qui1     Qui    85.7      7        0   14.5
Qui2     Qui   100.0     10        0   10.5
Qui3     Qui    66.7      3        0    6.0
Qui4     Qui    83.3      6        0    7.0
Rio1     Rio     7.1     14        0   15.5
Rio2     Rio     0.0      4        0    7.0
Rio3     Rio     0.0      4        0    8.0
Rio4     Rio     0.0      7        0   15.0