Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 6
  seen in >= 2 oysters: 4
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 4  [CpG-destroying: 1]
    1846111 A>G  Pum=0.526  Qui=0.0  Rio=0.6
    1846132 C>T  Pum=1.0  Qui=0.0  Rio=1.0
    1846147 C>A  Pum=1.0  Qui=0.0  Rio=0.947
    1846170 A>G  Pum=0.667  Qui=0.016  Rio=0.587

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     8.3     12        1   18.0
Qui1     Qui   100.0      4        0    9.0
Qui2     Qui   100.0      9        0   15.0
Qui3     Qui   100.0      9        0   15.5
Qui4     Qui   100.0      5        0   11.0
Rio1     Rio     0.0      8        1   13.0
Rio2     Rio     0.0      7        1   10.0
Rio3     Rio     0.0      7        1   14.0
Rio4     Rio     0.0      4        1    7.0