Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 39
  seen in >= 2 oysters: 3
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 4  [CpG-destroying: 3]
    1801007 G>A  Pum=  Qui=0.0  Rio=1.0
    1801180 C>T  Pum=  Qui=0.0  Rio=1.0
    1801791 T>A  Pum=1.0  Qui=0.0  Rio=1.0
    1801804 G>A  Pum=1.0  Qui=0.0  Rio=1.0

7 CpGs in target; 7 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    30.0     20        0    5.2
Qui1     Qui    89.3     28        0    7.2
Qui2     Qui    54.5     22        0    6.9
Qui3     Qui    86.2     29        0    9.6
Qui4     Qui    89.7     29        0    7.7
Rio1     Rio    52.0     25        0    6.9
Rio2     Rio    53.8     26        1    6.9
Rio3     Rio    55.0     20        1    6.1
Rio4     Rio    63.6     22        1    7.2