Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 4
  seen in >= 2 oysters: 2
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 2  [CpG-destroying: 2]
    1728883 G>A  Pum=0.8  Qui=0.846  Rio=0.042
    1728923 G>A  Pum=0.833  Qui=0.882  Rio=0.097

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.0      7        0   13.5
Qui1     Qui     0.0      1        0    5.0
Qui2     Qui     0.0      3        0    8.5
Qui3     Qui    16.7      6        0   13.0
Qui4     Qui    14.3      7        0   13.0
Rio1     Rio    83.3      6        0    8.0
Rio2     Rio    87.5      8        0   14.0
Rio3     Rio    57.1      7        0    8.0
Rio4     Rio   100.0     10        0   23.0