Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 8
  seen in >= 2 oysters: 2
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 2  [CpG-destroying: 1]
    1725682 G>A  Pum=  Qui=1.0  Rio=0.0
    1725702 G>T  Pum=  Qui=1.0  Rio=0.091

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.0      3        0    6.0
Qui1     Qui     0.0      4        0   11.0
Qui2     Qui     0.0      3        0    8.0
Qui3     Qui     0.0      4        0   10.0
Qui4     Qui     0.0      3        0    8.0
Rio1     Rio   100.0      3        0    8.0
Rio2     Rio    66.7      3        0    8.0
Rio3     Rio   100.0      1        0    5.0
Rio4     Rio   100.0      3        0    5.0