Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 34
  seen in >= 2 oysters: 9
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 0]
    15405497 T>A  Pum=0.444  Qui=0.6  Rio=0.065

29 CpGs in target; 23 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    50.0     72        0    6.6
Qui1     Qui    19.4    103        0    8.7
Qui2     Qui    33.3     87        0    6.6
Qui3     Qui    38.1    134        0    7.8
Qui4     Qui    33.3     72        0    5.5
Rio1     Rio    57.4    176        0   11.9
Rio2     Rio    58.6    111        0    7.9
Rio3     Rio    57.6     99        0    5.7
Rio4     Rio    55.2    116        0    5.7