Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 1
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 1]
    1477267 G>A  Pum=0.0  Qui=0.0  Rio=0.778

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum   100.0      4        0   12.0
Qui1     Qui   100.0      2        0   10.0
Qui2     Qui   100.0      4        0   12.5
Qui3     Qui   100.0      3        0   12.0
Qui4     Qui   100.0      4        0    9.0
Rio1     Rio     0.0      5        0   17.0
Rio2     Rio              0        0    7.0
Rio3     Rio   100.0      2        0   19.0
Rio4     Rio     0.0      1        0   10.5