Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 28
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

8 CpGs in target; 2 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    27.8     18        0    5.2
Qui1     Qui    38.0     50        0    7.6
Qui2     Qui    34.4     32        0    7.4
Qui3     Qui    56.2     16        0    5.8
Qui4     Qui    39.5     38        0    6.7
Rio1     Rio    53.7     41        0    8.2
Rio2     Rio    50.0     26        0    5.7
Rio3     Rio    72.5     51        0    8.2
Rio4     Rio    76.5     34        0    7.3